SNP Profiles of PLAYA.ALTA 2   View Data

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 Key

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_Input profile
CTAGGGCCTTAACTCCCTAAAACTAACC
1._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
2._GC-08-173-4-16
CTAGGGCCTTAACTCCCTAAAACTAACC
3._GC-08-173-4-16
CTAGGGCCTTAACTCCCTAAAACTAACC
4._GC-04-017-1-17
CTAGGGCCTTAACTCCCTAAAACTAACC
5._GC-04-017-1-17
CTAGGGCCTTAACTCCCTAAAACTAACC
6._GC-04-017-1-17
CTAGGGCCTTAACTCCCTAAAACTAACC
7._GC-04-017-1-17
CTAGGGCCTTAACTCCCTAAAACTAACC
8._GC-04-017-1-17
CTAGGGCCTTAACTCCCTAAAACTAACC
9._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
10._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
11._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
12._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
13._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
14._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
15._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
16._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
17._GC-08-173-4-16
CTAGGGCCTTAACTCCCTAAAACTAACC
18._GC-08-173-4-16
CTAGGGCCTTAACTCCCTAAAACTAACC
19._GC-08-173-4-16
CTAGGGCCTTAACTCCCTAAAACTAACC
20._PLAYA_ALTA_2_[VEN]
CTAGGGCCTTAACTCCCTAAAACTAACC
21._PLAYA_ALTA_2_[VEN]
_AGGGCC_AACTCC__AACTAACC
22._RUQ_232
__GG_____CT_AA_AA_
23._RUQ_232
_AGGGCC_______CTAA_
24._RUQ_232
AGAGCCGGAAAAAG__AAAAAGAAGG
25._MITC-000367
AGAGCCGGAAAAAG__AAAAAGAAGG
 1516171819202122232425262728
_Input profile
AAGGTTCCCGGGGGTTACCCTTCTCCGG
1._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
2._GC-08-173-4-16
AAGGTTCCCGGGGGTTACCCTTCTCCGG
3._GC-08-173-4-16
AAGGTTCCCGGGGGTTACCCTTCTCCGG
4._GC-04-017-1-17
AAGGTTCCCGGGGGTTACCCTTCTCCGG
5._GC-04-017-1-17
AAGGTTCCCGGGGGTTACCCTTCTCCGG
6._GC-04-017-1-17
AAGGTTCCCGGGGGTTACCCTTCTCCGG
7._GC-04-017-1-17
AAGGTTCCCGGGGGTTACCCTTCTCCGG
8._GC-04-017-1-17
AAGGTTCCCGGGGGTTACCCTTCTCCGG
9._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
10._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
11._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
12._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
13._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
14._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
15._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
16._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
17._GC-08-173-4-16
AAGGTTCCCGGGGGTTACCCTTCTCCGG
18._GC-08-173-4-16
AAGGTTCCCGGGGGTTACCCTTCTCCGG
19._GC-08-173-4-16
AAGGTTCCCGGGGGTTACCCTTCTCCGG
20._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
21._PLAYA_ALTA_2_[VEN]
AAGGTTCCCGGGGGTTACCCTTCTCCGG
22._RUQ_232
____CGGGGG_ACCC__CC_
23._RUQ_232
___CCCGGG_TTAACCTTCTCCGG
24._RUQ_232
AAGGAAGGCGCC_AAACCCAA_CC_
25._MITC-000367
AAGGAAGGCGCC_AAACCCAA_CC_
 2930313233343536373839   
_Input profile
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
1._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
2._GC-08-173-4-16
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
3._GC-08-173-4-16
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
4._GC-04-017-1-17
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
5._GC-04-017-1-17
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
6._GC-04-017-1-17
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
7._GC-04-017-1-17
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
8._GC-04-017-1-17
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
9._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
10._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
11._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
12._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
13._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
14._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
15._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
16._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
17._GC-08-173-4-16
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
18._GC-08-173-4-16
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
19._GC-08-173-4-16
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
20._PLAYA_ALTA_2_[VEN]
GGATCCAGCCAACTGGCCTTGGX_XX_XX_X
21._PLAYA_ALTA_2_[VEN]
GGATCCAG_AACTGGCCTTGGX_XX_XX_X
22._RUQ_232
___AG____CC__X_XX_XX_X
23._RUQ_232
_ATCCAGCCAACTGGCC__X_XX_XX_X
24._RUQ_232
GGATGGAGGGAAAGCCCCTTGGX_XX_XX_X
25._MITC-000367
GGATGGAGGGAAAGCCCCTTGGX_XX_XX_X

Input profile: PLAYA_ALTA_2_[VEN]

 
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Mars Center for Cocoa Science, Brazil
Location: 8416 10
 Dapeng Zhang, 2016

1._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 7
 Dapeng Zhang, 2016

2._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

5._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 11
 Dapeng Zhang, 2016

10._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 9
 Dapeng Zhang, 2016

11._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 8
 Dapeng Zhang, 2016

12._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 8 > FP
 Dapeng Zhang, 2016

13._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 7
 Dapeng Zhang, 2016

14._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 6
 Dapeng Zhang, 2016

15._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 5
 Dapeng Zhang, 2016

16._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

20._PLAYA_ALTA_2_[VEN]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0303
 Dapeng Zhang, 2016

21._PLAYA_ALTA_2_[VEN]

identical
34 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

22._PLAYA_ALTA_2_[VEN] RUQ_232

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._PLAYA_ALTA_2_[VEN] RUQ_232

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PLAYA_ALTA_2_[VEN] RUQ_232

52.9 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._PLAYA_ALTA_2_[VEN] MITC-000367

52.9 %
34 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25